- final boolean verbose ) throws IOException, SDIException, RIOException {
- return new RIO( gene_trees, species_tree, algorithm, rerooting, outgroup, first, last, produce_log, verbose );
+ final boolean verbose,
+ final boolean transfer_taxonomy ) throws IOException, SDIException,
+ RIOException {
+ return new RIO( gene_trees,
+ species_tree,
+ algorithm,
+ rerooting,
+ outgroup,
+ first,
+ last,
+ produce_log,
+ verbose,
+ transfer_taxonomy );