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enable phylogram if positive bl edited
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
sdi
/
NodesLinkingResult.java
diff --git
a/forester/java/src/org/forester/sdi/NodesLinkingResult.java
b/forester/java/src/org/forester/sdi/NodesLinkingResult.java
index
dd5bc83
..
1ae5661
100644
(file)
--- a/
forester/java/src/org/forester/sdi/NodesLinkingResult.java
+++ b/
forester/java/src/org/forester/sdi/NodesLinkingResult.java
@@
-27,6
+27,14
@@
final class NodesLinkingResult {
_tax_comp_base = null;
}
_tax_comp_base = null;
}
+ final Set<PhylogenyNode> getMappedSpeciesTreeNodes() {
+ return _mapped_species_tree_nodes;
+ }
+
+ final SortedSet<String> getScientificNamesMappedToReducedSpecificity() {
+ return _scientific_names_mapped_to_reduced_specificity;
+ }
+
final List<PhylogenyNode> getStrippedGeneTreeNodes() {
return _stripped_gene_tree_nodes;
}
final List<PhylogenyNode> getStrippedGeneTreeNodes() {
return _stripped_gene_tree_nodes;
}
@@
-35,10
+43,6
@@
final class NodesLinkingResult {
return _stripped_species_tree_nodes;
}
return _stripped_species_tree_nodes;
}
- final Set<PhylogenyNode> getMappedSpeciesTreeNodes() {
- return _mapped_species_tree_nodes;
- }
-
final TaxonomyComparisonBase getTaxCompBase() {
return _tax_comp_base;
}
final TaxonomyComparisonBase getTaxCompBase() {
return _tax_comp_base;
}
@@
-46,8
+50,4
@@
final class NodesLinkingResult {
final void setTaxCompBase( final TaxonomyComparisonBase tax_comp_base ) {
_tax_comp_base = tax_comp_base;
}
final void setTaxCompBase( final TaxonomyComparisonBase tax_comp_base ) {
_tax_comp_base = tax_comp_base;
}
-
- final SortedSet<String> getScientificNamesMappedToReducedSpecificity() {
- return _scientific_names_mapped_to_reduced_specificity;
- }
}
}