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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
sdi
/
SDIR.java
diff --git
a/forester/java/src/org/forester/sdi/SDIR.java
b/forester/java/src/org/forester/sdi/SDIR.java
index
98f1cc5
..
c9224da
100644
(file)
--- a/
forester/java/src/org/forester/sdi/SDIR.java
+++ b/
forester/java/src/org/forester/sdi/SDIR.java
@@
-212,6
+212,7
@@
public class SDIR {
* Array) must be no lower than 1
* @return array of rooted Trees with duplication vs. speciation assigned if
* return_trees is set to true, null otherwise
* Array) must be no lower than 1
* @return array of rooted Trees with duplication vs. speciation assigned if
* return_trees is set to true, null otherwise
+ * @throws SDIException
*/
public Phylogeny[] infer( final Phylogeny gene_tree,
final Phylogeny species_tree,
*/
public Phylogeny[] infer( final Phylogeny gene_tree,
final Phylogeny species_tree,
@@
-219,7
+220,7
@@
public class SDIR {
boolean minimize_sum_of_dup,
final boolean minimize_height,
final boolean return_trees,
boolean minimize_sum_of_dup,
final boolean minimize_height,
final boolean return_trees,
- int max_trees_to_return ) {
+ int max_trees_to_return ) throws SDIException {
init();
SDIse sdise = null;
final ArrayList<Phylogeny> trees = new ArrayList<Phylogeny>();
init();
SDIse sdise = null;
final ArrayList<Phylogeny> trees = new ArrayList<Phylogeny>();