+ else if ( p instanceof NexusPhylogeniesParser ) {
+ final NexusPhylogeniesParser nex = ( NexusPhylogeniesParser ) p;
+ nex.setReplaceUnderscores( replace_undescores_in_nhx_trees );
+ nex.setIgnoreQuotes( ignore_quotes_in_nhx_trees );
+ nex.setTaxonomyExtraction( taxonomy_extraction_in_nhx_trees );
+ }