+ public static Sequence copySequence( final Sequence seq ) {
+ final char[] s = new char[ seq.getMolecularSequence().length ];
+ for( int i = 0; i < seq.getMolecularSequence().length; i++ ) {
+ s[ i ] = seq.getMolecularSequence()[ i ];
+ }
+ return new BasicSequence( new String( seq.getIdentifier() ), s, seq.getType() );
+ }
+
+ public static Sequence createAaSequence( final String identifier, final String mol_sequence ) {