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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
surfacing
/
AdjactantDirectedBinaryDomainCombination.java
diff --git
a/forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
b/forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
index
6e6da35
..
1bcbc60
100644
(file)
--- a/
forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
+++ b/
forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
@@
-22,26
+22,21
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.surfacing;
import org.forester.protein.BinaryDomainCombination;
package org.forester.surfacing;
import org.forester.protein.BinaryDomainCombination;
-import org.forester.protein.DomainId;
public class AdjactantDirectedBinaryDomainCombination extends BasicBinaryDomainCombination {
public class AdjactantDirectedBinaryDomainCombination extends BasicBinaryDomainCombination {
- public AdjactantDirectedBinaryDomainCombination( final DomainId n_terminal, final DomainId c_terminal ) {
+ public AdjactantDirectedBinaryDomainCombination( final String n_terminal, final String c_terminal ) {
super();
if ( ( n_terminal == null ) || ( c_terminal == null ) ) {
throw new IllegalArgumentException( "attempt to create binary domain combination using null" );
}
super();
if ( ( n_terminal == null ) || ( c_terminal == null ) ) {
throw new IllegalArgumentException( "attempt to create binary domain combination using null" );
}
- _id_0 = n_terminal.getId();
- _id_1 = c_terminal.getId();
- }
-
- public AdjactantDirectedBinaryDomainCombination( final String n_terminal, final String c_terminal ) {
- this( new DomainId( n_terminal ), new DomainId( c_terminal ) );
+ _id0 = n_terminal;
+ _id1 = c_terminal;
}
public static AdjactantDirectedBinaryDomainCombination createInstance( final String ids ) {
}
public static AdjactantDirectedBinaryDomainCombination createInstance( final String ids ) {