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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
surfacing
/
BasicCombinableDomains.java
diff --git
a/forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
b/forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
index
c04333c
..
2f48a64
100644
(file)
--- a/
forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
+++ b/
forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
@@
-40,11
+40,11
@@
import org.forester.util.ForesterUtil;
public class BasicCombinableDomains implements CombinableDomains {
public class BasicCombinableDomains implements CombinableDomains {
+ final private TreeMap<String, Integer> _combining_domains;
final private String _key_domain;
private int _key_domain_count;
final private String _key_domain;
private int _key_domain_count;
- final private Species _species;
- final private TreeMap<String, Integer> _combining_domains;
final private Set<String> _proteins_with_key_domain;
final private Set<String> _proteins_with_key_domain;
+ final private Species _species;
public BasicCombinableDomains( final String key_domain, final Species species ) {
_key_domain = key_domain;
public BasicCombinableDomains( final String key_domain, final Species species ) {
_key_domain = key_domain;
@@
-117,10
+117,6
@@
public class BasicCombinableDomains implements CombinableDomains {
return sb;
}
return sb;
}
- protected TreeMap<String, Integer> getCombiningDomains() {
- return _combining_domains;
- }
-
@Override
public String getKeyDomain() {
return _key_domain;
@Override
public String getKeyDomain() {
return _key_domain;
@@
-132,6
+128,11
@@
public class BasicCombinableDomains implements CombinableDomains {
}
@Override
}
@Override
+ public Set<String> getKeyDomainProteins() {
+ return _proteins_with_key_domain;
+ }
+
+ @Override
public int getKeyDomainProteinsCount() {
return getKeyDomainProteins().size();
}
public int getKeyDomainProteinsCount() {
return getKeyDomainProteins().size();
}
@@
-190,8
+191,7
@@
public class BasicCombinableDomains implements CombinableDomains {
return sb.toString();
}
return sb.toString();
}
- @Override
- public Set<String> getKeyDomainProteins() {
- return _proteins_with_key_domain;
+ protected TreeMap<String, Integer> getCombiningDomains() {
+ return _combining_domains;
}
}
}
}