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cleanup
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
surfacing
/
CombinationsBasedPairwiseDomainSimilarity.java
diff --git
a/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
b/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
index
3b0c6dc
..
a98298d
100644
(file)
--- a/
forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
+++ b/
forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
@@
-23,15
+23,15
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.surfacing;
public class CombinationsBasedPairwiseDomainSimilarity implements PairwiseDomainSimilarity {
package org.forester.surfacing;
public class CombinationsBasedPairwiseDomainSimilarity implements PairwiseDomainSimilarity {
- private final int _same_domains;
- private final int _different_domains;
private final int _difference_in_counts;
private final int _difference_in_counts;
+ private final int _different_domains;
+ private final int _same_domains;
private final double _score;
public CombinationsBasedPairwiseDomainSimilarity( final int same_domains,
private final double _score;
public CombinationsBasedPairwiseDomainSimilarity( final int same_domains,