// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
public PairwiseDomainSimilarity calculateSimilarity( final CombinableDomains domains_1,
final CombinableDomains domains_2 ) {
if ( !domains_1.getKeyDomain().equals( domains_2.getKeyDomain() ) ) {
throw new IllegalArgumentException( "attempt to calculate similarity between domain collection with different keys" );
}
public PairwiseDomainSimilarity calculateSimilarity( final CombinableDomains domains_1,
final CombinableDomains domains_2 ) {
if ( !domains_1.getKeyDomain().equals( domains_2.getKeyDomain() ) ) {
throw new IllegalArgumentException( "attempt to calculate similarity between domain collection with different keys" );
}
- final List<DomainId> d1 = domains_1.getCombinableDomains();
- final List<DomainId> d2 = domains_2.getCombinableDomains();
+ final List<String> d1 = domains_1.getCombinableDomains();
+ final List<String> d2 = domains_2.getCombinableDomains();