- public StringBuffer toStringBuffer( final PrintableDomainSimilarity.PRINT_OPTION print_option );
-
- static public enum DomainSimilarityScoring {
- DOMAINS, PROTEINS, COMBINATIONS;
- }
-
- public static enum DomainSimilaritySortField {
- MIN, MAX, SD, MEAN, ABS_MAX_COUNTS_DIFFERENCE, MAX_COUNTS_DIFFERENCE, MAX_DIFFERENCE, SPECIES_COUNT, DOMAIN_ID,
- }
+ public StringBuffer toStringBuffer( PRINT_OPTION print_option,
+ Map<String, Integer> tax_code_to_id_map,
+ Phylogeny phy );