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more tests for isDuplication() and isSpecation() added
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
surfacing
/
DomainSimilarityCalculator.java
diff --git
a/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
b/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
index
fa0ea62
..
3983dd6
100644
(file)
--- a/
forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
+++ b/
forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
@@
-37,11
+37,11
@@
public interface DomainSimilarityCalculator {
final boolean ignore_domains_without_combinations_in_any_genome,
final boolean ignore_domains_specific_to_one_genome );;
final boolean ignore_domains_without_combinations_in_any_genome,
final boolean ignore_domains_specific_to_one_genome );;
- public static enum Detailedness {
- BASIC, LIST_COMBINING_DOMAIN_FOR_EACH_SPECIES, PUNCTILIOUS
- }
+ public static enum Detailedness {
+ BASIC, LIST_COMBINING_DOMAIN_FOR_EACH_SPECIES, PUNCTILIOUS
+ }
- public static enum GoAnnotationOutput {
- NONE, ALL
- }
+ public static enum GoAnnotationOutput {
+ ALL, NONE
+ }
}
}