- public SortedSet<PrintableDomainSimilarity> calculateSimilarities( final PairwiseDomainSimilarityCalculator pairwise_calculator,
- final List<GenomeWideCombinableDomains> cdc_list,
- final boolean ignore_domains_without_combinations_in_any_genome,
- final boolean ignore_domains_specific_to_one_genome );;
+ public SortedSet<DomainSimilarity> calculateSimilarities( final PairwiseDomainSimilarityCalculator pairwise_calculator,
+ final List<GenomeWideCombinableDomains> cdc_list,
+ final boolean ignore_domains_without_combinations_in_any_genome,
+ final boolean ignore_domains_specific_to_one_genome );;