- final DescriptiveStatistics stats = new BasicDescriptiveStatistics();
- String histogram_title = null;
- switch ( sort_field ) {
- case ABS_MAX_COUNTS_DIFFERENCE:
- if ( treat_as_binary ) {
- histogram_title = "absolute counts difference:";
- }
- else {
- histogram_title = "absolute (maximal) counts difference:";
- }
- break;
- case MAX_COUNTS_DIFFERENCE:
- if ( treat_as_binary ) {
- histogram_title = "counts difference:";
- }
- else {
- histogram_title = "(maximal) counts difference:";
- }
- break;
- case DOMAIN_ID:
- histogram_title = "score mean:";
- break;
- case MIN:
- histogram_title = "score minimum:";
- break;
- case MAX:
- histogram_title = "score maximum:";
- break;
- case MAX_DIFFERENCE:
- if ( treat_as_binary ) {
- histogram_title = "difference:";
- }
- else {
- histogram_title = "(maximal) difference:";
- }
- break;
- case MEAN:
- histogram_title = "score mean:";
- break;
- case SD:
- histogram_title = "score standard deviation:";
- break;
- case SPECIES_COUNT:
- histogram_title = "species number:";
- break;
- default:
- throw new AssertionError( "Unknown sort field: " + sort_field );
- }
- for( final DomainSimilarity similarity : similarities ) {
- switch ( sort_field ) {
- case ABS_MAX_COUNTS_DIFFERENCE:
- stats.addValue( Math.abs( similarity.getMaximalDifferenceInCounts() ) );
- break;
- case MAX_COUNTS_DIFFERENCE:
- stats.addValue( similarity.getMaximalDifferenceInCounts() );
- break;
- case DOMAIN_ID:
- stats.addValue( similarity.getMeanSimilarityScore() );
- break;
- case MIN:
- stats.addValue( similarity.getMinimalSimilarityScore() );
- break;
- case MAX:
- stats.addValue( similarity.getMaximalSimilarityScore() );
- break;
- case MAX_DIFFERENCE:
- stats.addValue( similarity.getMaximalDifference() );
- break;
- case MEAN:
- stats.addValue( similarity.getMeanSimilarityScore() );
- break;
- case SD:
- stats.addValue( similarity.getStandardDeviationOfSimilarityScore() );
- break;
- case SPECIES_COUNT:
- stats.addValue( similarity.getSpecies().size() );
- break;
- default:
- throw new AssertionError( "Unknown sort field: " + sort_field );
- }
- }
- AsciiHistogram histo = null;
- try {
- if ( stats.getMin() < stats.getMax() ) {
- histo = new AsciiHistogram( stats, histogram_title );
- }
- }
- catch ( Exception e ) {
- histo = null;
- }