- final private static String TP_TAXONOMY_CODE = "TAXONOMY_CODE";
- final private static String TP_TAXONOMY_ID = "TAXONOMY_ID";
- final private static String TP_TAXONOMY_ID_PROVIDER = "TAXONOMY_ID_PROVIDER";
- final private static String TP_TAXONOMY_SN = "TAXONOMY_SN";
- final private static String TP_TAXONOMY_CN = "TAXONOMY_CN";
- final private static String TP_TAXONOMY_SYN = "TAXONOMY_SYN";
- final private static String TP_SEQ_SYMBOL = "SEQ_SYMBOL";
- final private static String TP_SEQ_ACCESSION = "SEQ_ACCESSION";
- final private static String TP_SEQ_ACCESSION_SOURCE = "SEQ_ACCESSION_SOURCE";
- final private static String TP_SEQ_ANNOTATION_DESC = "SEQ_ANNOTATION_DESC";
- final private static String TP_SEQ_ANNOTATION_REF = "SEQ_ANNOTATION_REF";
- final private static String TP_SEQ_MOL_SEQ = "SEQ_MOL_SEQ";
- final private static String TP_SEQ_NAME = "SEQ_NAME";
- final private static String TP_NODE_NAME = "NODE_NAME";
- final private static Pattern NODENAME_SEQNUMBER_TAXDOMAINNUMBER = Pattern
- .compile( "^([a-fA-Z0-9]{1,5})_([A-Z0-9]{2,4}[A-Z])(\\d{1,4})$" );
- public final static boolean SANITIZE = false;
- public final static boolean VERBOSE = true;
- private static final boolean CUT = true;
+ final private static String TP_TAXONOMY_CODE = "TAXONOMY_CODE";
+ final private static String TP_TAXONOMY_ID = "TAXONOMY_ID";
+ final private static String TP_TAXONOMY_ID_PROVIDER = "TAXONOMY_ID_PROVIDER";
+ final private static String TP_TAXONOMY_SN = "TAXONOMY_SN";
+ final private static String TP_TAXONOMY_CN = "TAXONOMY_CN";
+ final private static String TP_TAXONOMY_SYN = "TAXONOMY_SYN";
+ final private static String TP_SEQ_SYMBOL = "SEQ_SYMBOL";
+ final private static String TP_SEQ_ACCESSION = "SEQ_ACCESSION";
+ final private static String TP_SEQ_ACCESSION_SOURCE = "SEQ_ACCESSION_SOURCE";
+ final private static String TP_SEQ_ANNOTATION_DESC = "SEQ_ANNOTATION_DESC";
+ final private static String TP_SEQ_ANNOTATION_REF = "SEQ_ANNOTATION_REF";
+ final private static String TP_SEQ_MOL_SEQ = "SEQ_MOL_SEQ";
+ final private static String TP_SEQ_NAME = "SEQ_NAME";
+ final private static String TP_NODE_NAME = "NODE_NAME";
+ public final static boolean SANITIZE = false;
+ public final static boolean VERBOSE = true;