// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
if ( o.containsKey( option_name ) ) {
final String value = o.get( option_name );
if ( !ForesterUtil.isEmpty( value ) ) {
if ( o.containsKey( option_name ) ) {
final String value = o.get( option_name );
if ( !ForesterUtil.isEmpty( value ) ) {
*/
public String getOptionValueAsCleanString( final String option_name ) throws IllegalArgumentException {
return getOptionValue( option_name ).replaceAll( "\"", "" ).replaceAll( "\'", "" );
}
*/
public String getOptionValueAsCleanString( final String option_name ) throws IllegalArgumentException {
return getOptionValue( option_name ).replaceAll( "\"", "" ).replaceAll( "\'", "" );
}
public double getOptionValueAsDouble( final String option_name ) throws IOException {
double d = -Double.MAX_VALUE;
try {
public double getOptionValueAsDouble( final String option_name ) throws IOException {
double d = -Double.MAX_VALUE;
try {
for( int i = 0; i < args.length; ++i ) {
final String arg = args[ i ].trim();
_command_line_str += arg;
for( int i = 0; i < args.length; ++i ) {
final String arg = args[ i ].trim();
_command_line_str += arg;
// }
if ( getAllOptions().containsKey( key ) ) {
throw new IllegalArgumentException( "attempt to set option \"" + key + "\" mutiple times [" + option
// }
if ( getAllOptions().containsKey( key ) ) {
throw new IllegalArgumentException( "attempt to set option \"" + key + "\" mutiple times [" + option