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fixing lining up of domains.
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
util
/
TaxonomyUtil.java
diff --git
a/forester/java/src/org/forester/util/TaxonomyUtil.java
b/forester/java/src/org/forester/util/TaxonomyUtil.java
index
496c939
..
ee5427a
100644
(file)
--- a/
forester/java/src/org/forester/util/TaxonomyUtil.java
+++ b/
forester/java/src/org/forester/util/TaxonomyUtil.java
@@
-26,6
+26,9
@@
public final class TaxonomyUtil {
}
private final static Map<String, String> _default_taxcode_taxgroup_map = new HashMap<String, String>();
static {
}
private final static Map<String, String> _default_taxcode_taxgroup_map = new HashMap<String, String>();
static {
+ put( "BUFBU", "deuterostomia" );
+ put( "NOTVI", "deuterostomia" );
+ put( "SIRIN", "deuterostomia" );
put( "ASTMX", "deuterostomia" );
put( "CALMI", "deuterostomia" );
put( "FICAL", "deuterostomia" );
put( "ASTMX", "deuterostomia" );
put( "CALMI", "deuterostomia" );
put( "FICAL", "deuterostomia" );
@@
-166,6
+169,12
@@
public final class TaxonomyUtil {
put( "SCHMA", "protostomia" );
put( "CLOSI", "protostomia" );
put( "SCHMD", "protostomia" );
put( "SCHMA", "protostomia" );
put( "CLOSI", "protostomia" );
put( "SCHMD", "protostomia" );
+ put( "ANOGL", "protostomia" );
+ put( "BLAGE", "protostomia" );
+ put( "ZOONE", "protostomia" );
+ put( "SCHAM", "protostomia" );
+ put( "GRYPE", "protostomia" );
+ put( "ONCFA", "protostomia" );
put( "ACRDI", "cnidaria" );
put( "NEMVE", "cnidaria" );
put( "HYDVU", "cnidaria" );
put( "ACRDI", "cnidaria" );
put( "NEMVE", "cnidaria" );
put( "HYDVU", "cnidaria" );
@@
-361,6
+370,7
@@
public final class TaxonomyUtil {
put( "ALIXX", "stramenopiles" );
put( "BLAHO", "stramenopiles" );
put( "BIGNA", "rhizaria" );
put( "ALIXX", "stramenopiles" );
put( "BLAHO", "stramenopiles" );
put( "BIGNA", "rhizaria" );
+ put( "RETFI", "rhizaria" );
put( "TRYB2", "excavata" );
put( "TRYCR", "excavata" );
put( "LEIMA", "excavata" );
put( "TRYB2", "excavata" );
put( "TRYCR", "excavata" );
put( "LEIMA", "excavata" );