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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
ws
/
seqdb
/
SequenceDatabaseEntry.java
diff --git
a/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
b/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
index
9ae7892
..
d1cd293
100644
(file)
--- a/
forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
+++ b/
forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
@@
-21,23
+21,44
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.ws.seqdb;
package org.forester.ws.seqdb;
-public interface SequenceDatabaseEntry {
+import java.util.SortedSet;
- public boolean isEmpty();
+import org.forester.go.GoTerm;
+import org.forester.phylogeny.data.Accession;
+import org.forester.phylogeny.data.Annotation;
+import org.forester.sequence.MolecularSequence;
+
+public interface SequenceDatabaseEntry {
public String getAccession();
public String getAccession();
+ public String getGeneName();
+
+ public SortedSet<GoTerm> getGoTerms();
+
+ public SortedSet<Annotation> getAnnotations();
+
public String getProvider();
public String getSequenceName();
public String getProvider();
public String getSequenceName();
- public String getTaxonomyScientificName();
+ public String getSequenceSymbol();
public String getTaxonomyIdentifier();
public String getTaxonomyIdentifier();
- public String getSequenceSymbol();
+ public String getTaxonomyScientificName();
+
+ public boolean isEmpty();
+
+ public SortedSet<Accession> getCrossReferences();
+
+ public String getMap();
+
+ public String getChromosome();
+
+ public MolecularSequence getMolecularSequence();
}
\ No newline at end of file
}
\ No newline at end of file