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[jalview.git]
/
forester
/
ruby
/
evoruby
/
exe
/
run_phylo_pipeline.rb
diff --git
a/forester/ruby/evoruby/exe/run_phylo_pipeline.rb
b/forester/ruby/evoruby/exe/run_phylo_pipeline.rb
index
d59c61c
..
45142f0
100755
(executable)
--- a/
forester/ruby/evoruby/exe/run_phylo_pipeline.rb
+++ b/
forester/ruby/evoruby/exe/run_phylo_pipeline.rb
@@
-59,7
+59,7
@@
module Evoruby
cmd = "#{hmmsearch} --nobias -E 1000 --domtblout #{base_name}.hmmsearch_#{hmm} ~/DATA/PFAM/PFAM250/PFAM_A_HMMs/#{hmm}.hmm #{base_name}.fasta"
run_command( cmd )
cmd = "#{hmmsearch} --nobias -E 1000 --domtblout #{base_name}.hmmsearch_#{hmm} ~/DATA/PFAM/PFAM250/PFAM_A_HMMs/#{hmm}.hmm #{base_name}.fasta"
run_command( cmd )
- cmd = "#{dsx} -dd -e=1e-#{e_value_exp.to_s} -l=#{length} #{base_name}.hmmsearch_#{hmm} #{base_name}.fasta #{base_name}_e#{e_value_exp.to_s}_#{length}"
+ cmd = "#{dsx} -dd -e=1e-#{e_value_exp.to_s} -l=#{length} #{base_name}.hmmsearch_#{hmm} #{base_name}.fasta #{base_name}_#{hmm}_e#{e_value_exp.to_s}_#{length}"
run_command( cmd )
end
run_command( cmd )
end