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[jalview.git]
/
forester
/
ruby
/
evoruby
/
exe
/
run_phylo_pipeline_x.rb
diff --git
a/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb
b/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb
index
8d0a27d
..
b13581a
100644
(file)
--- a/
forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb
+++ b/
forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb
@@
-131,10
+131,10
@@
module Evoruby
if LAUNCH_ANALYSIS
puts "f. analysis:"
Dir.chdir "#{hmm_name}/msa/"
if LAUNCH_ANALYSIS
puts "f. analysis:"
Dir.chdir "#{hmm_name}/msa/"
- run_command "#{PF} -s"
+ run_command "#{PF} -b=1 -s"
Dir.chdir "../.."
Dir.chdir "#{hmm_name}/msa100/"
Dir.chdir "../.."
Dir.chdir "#{hmm_name}/msa100/"
- run_command "#{PF} -s"
+ run_command "#{PF} -b=100 -s"
Dir.chdir "../.."
puts
end
Dir.chdir "../.."
puts
end