- w.write(unique_genes_msa, "seqs_from_unique_genes.fasta")
- w.write(longest_non_unique_genes_msa, "longest_seqs_from_nonunique_genes.fasta")
+ w.write( unique_genes_msa, outbase + "_seqs_from_unique_genes.fasta" )
+ w.write( longest_non_unique_genes_msa, outbase + "_longest_seqs_from_nonunique_genes.fasta" )
+
+ all_msa_per_species.each_pair do |s,m|
+ w = FastaWriter.new
+ w.write( m, outbase + "_" + s + ".fasta" )
+ end
+