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[jalview.git]
/
forester
/
ruby
/
evoruby
/
lib
/
evo
/
tool
/
multi_sequence_extractor.rb
diff --git
a/forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
b/forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
index
08c034b
..
40b1211
100644
(file)
--- a/
forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
+++ b/
forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
@@
-291,7
+291,7
@@
module Evoruby
print_counts( per_species_counter, log, Constants::LINE_DELIMITER )
per_species_counter = 0
end
print_counts( per_species_counter, log, Constants::LINE_DELIMITER )
per_species_counter = 0
end
- puts " " + species_counter.to_s + ": " + current_species + " [" + my_readlink + "]"
+ puts " " + species_counter.to_s + ":" + current_species + " [" + my_readlink + "]"
log << species_counter.to_s + ": " + current_species + " [" + my_readlink + "]" + Constants::LINE_DELIMITER
species_counter += 1
end
log << species_counter.to_s + ": " + current_species + " [" + my_readlink + "]" + Constants::LINE_DELIMITER
species_counter += 1
end
@@
-552,10
+552,10
@@
module Evoruby
rescue Exception => e
Util.fatal_error( PRG_NAME, "error: " + e.to_s )
end
rescue Exception => e
Util.fatal_error( PRG_NAME, "error: " + e.to_s )
end
- if @seqs <= 10000000
+ if @seqs <= 100000000
@file_to_msa[ input ] = msa
@seqs += msa.get_number_of_seqs
@file_to_msa[ input ] = msa
@seqs += msa.get_number_of_seqs
- puts "total seqs in memory: " + @seqs.to_str
+ puts " total seqs in memory: " + @seqs.to_s
end
msa
end
end
msa
end