git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
inprogress
[jalview.git]
/
forester
/
ruby
/
evoruby
/
lib
/
evo
/
tool
/
multi_sequence_extractor.rb
diff --git
a/forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
b/forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
index
8a2dadc
..
f6365d8
100644
(file)
--- a/
forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
+++ b/
forester/ruby/evoruby/lib/evo/tool/multi_sequence_extractor.rb
@@
-292,11
+292,10
@@
module Evoruby
per_species_counter = 0
end
puts " " + species_counter.to_s + ":" + current_species + " [" + my_readlink + "]"
per_species_counter = 0
end
puts " " + species_counter.to_s + ":" + current_species + " [" + my_readlink + "]"
- log << species_counter.to_s + ": " + current_species + " [" + my_readlink + "]" + Constants::LINE_DELIMITER
+ log << species_counter.to_s << ": " << current_species << " [" + my_readlink + "]" << Constants::LINE_DELIMITER
species_counter += 1
end
species_counter += 1
end
- #puts " " + seq_name
- log << " " + seq_name + Constants::LINE_DELIMITER
+ log << " " << seq_name << Constants::LINE_DELIMITER
per_species_counter = per_species_counter + 1
seq = nil
per_species_counter = per_species_counter + 1
seq = nil
@@
-521,8
+520,8
@@
module Evoruby
end
def print_counts( per_species_counter, log, ld )
end
def print_counts( per_species_counter, log, ld )
- puts " [sum: " + per_species_counter.to_s + "]"
- log << " [sum: " + per_species_counter.to_s + "]" + ld
+ puts " sum: " + per_species_counter.to_s
+ log << " sum: " + per_species_counter.to_s + ld
end
def read_fasta_file( input )
end
def read_fasta_file( input )