- begin
- Util.check_file_for_readability( seqs_file_name )
- rescue ArgumentError
- Util.fatal_error( PRG_NAME, 'failed to read from [#{seqs_file_name }]: ' + $! )
- end
-
- cmd = decorator +
- ' -t -p -f=m ' + phylogeny_file + ' ' +
- seqs_file_name + ' ' + TMP_FILE_1
- puts cmd
- begin
- execute_cmd( cmd, log )
- rescue Error
- Util.fatal_error( PRG_NAME, 'error: ' + $! )
- end
-
- cmd = decorator + ' ' + DECORATOR_OPTIONS_DOMAINS + ' ' +
- '-f=d ' + TMP_FILE_1 + ' ' +
- domains_mapfile_name + ' ' +TMP_FILE_2
- puts cmd
- begin
- execute_cmd( cmd, log )
- rescue Error
- Util.fatal_error( PRG_NAME, 'error: ' + $! )
- end
+# begin
+# Util.check_file_for_readability( seqs_file_name )
+# rescue ArgumentError
+# Util.fatal_error( PRG_NAME, 'failed to read from [#{seqs_file_name }]: ' + $! )
+# end
+
+# cmd = decorator +
+# ' -t -p -f=m ' + phylogeny_file + ' ' +
+# seqs_file_name + ' ' + TMP_FILE_1
+# puts cmd
+# begin
+# execute_cmd( cmd, log )
+# rescue Error
+# Util.fatal_error( PRG_NAME, 'error: ' + $! )
+# end
+#
+# cmd = decorator + ' ' + DECORATOR_OPTIONS_DOMAINS + ' ' +
+# '-f=d ' + TMP_FILE_1 + ' ' +
+# domains_mapfile_name + ' ' +TMP_FILE_2
+# puts cmd
+# begin
+# execute_cmd( cmd, log )
+# rescue Error
+# Util.fatal_error( PRG_NAME, 'error: ' + $! )
+# end