+ def update_phylo_pl_options( phylo_pl_options, bootstraps )
+ #opts = phylo_pl_options
+ puts
+ puts "opts: " + phylo_pl_options
+ unless phylo_pl_options =~ /B\d/
+ phylo_pl_options = 'B' + bootstraps.to_s + phylo_pl_options
+ end
+ phylo_pl_options = '-' + phylo_pl_options
+ puts
+ puts "new opts: " + phylo_pl_options
+ phylo_pl_options
+ end
+