- if desc =~ /^>?\s*\S{1,10}_([A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA|CAP)/
- new_desc = counter.to_s( 16 ) + "_" + $1
- elsif extract_taxonomy
- if desc =~/\s\[([A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA|CAP)\]/
+ desc.gsub!( /\s+/, ' ' )
+ #if desc =~ /^>?\s*\S{1,10}_(([A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA|CAP)/
+ # new_desc = counter.to_s( 16 ) + "_" + $1
+ if extract_taxonomy
+ if desc =~/\s\[(([A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA|CAP)\]/