while line = file.gets
if line =~ /^([A-Z0-9]{3,5})/
puts "/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/" + $1 + ".hmmscan " + $1
while line = file.gets
if line =~ /^([A-Z0-9]{3,5})/
puts "/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/" + $1 + ".hmmscan " + $1