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[jalview.git]
/
forester
/
ruby
/
scripts
/
x.rb
diff --git
a/forester/ruby/scripts/x.rb
b/forester/ruby/scripts/x.rb
index
cb70c70
..
883b215
100644
(file)
--- a/
forester/ruby/scripts/x.rb
+++ b/
forester/ruby/scripts/x.rb
@@
-6,10
+6,10
@@
Dir.foreach(".") do |f|
cmd = "#{PRG} -ie=10 -a -pe=1 -m=RRMa -s=#{taxon} #{taxon}.hmmscan_260 #{taxon}_ie10_domain_table > #{taxon}_ie10_summary_table.txt"
puts cmd
output = IO.popen( cmd )
cmd = "#{PRG} -ie=10 -a -pe=1 -m=RRMa -s=#{taxon} #{taxon}.hmmscan_260 #{taxon}_ie10_domain_table > #{taxon}_ie10_summary_table.txt"
puts cmd
output = IO.popen( cmd )
- elsif f =~ /^([A-Z0-9]{3,6})_cdhit090\.hmmscan_260/
+ elsif f =~ /^([A-Z0-9]{3,6})_cdhit090\.hmmscan_260/
taxon = $1
cmd = "#{PRG} -ie=10 -a -pe=1 -m=RRMa -s=#{taxon} #{taxon}_cdhit090.hmmscan_260 #{taxon}_cdhit090_ie10_domain_table > #{taxon}_cdhit090_ie10_summary_table.txt"
puts cmd
output = IO.popen( cmd )
taxon = $1
cmd = "#{PRG} -ie=10 -a -pe=1 -m=RRMa -s=#{taxon} #{taxon}_cdhit090.hmmscan_260 #{taxon}_cdhit090_ie10_domain_table > #{taxon}_cdhit090_ie10_summary_table.txt"
puts cmd
output = IO.popen( cmd )
- end
+ end
end
\ No newline at end of file
end
\ No newline at end of file