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tests...
[jalview.git]
/
forester
/
sh
/
x_msa_pro.sh
diff --git
a/forester/sh/x_msa_pro.sh
b/forester/sh/x_msa_pro.sh
index
57544c1
..
9bfc92c
100644
(file)
--- a/
forester/sh/x_msa_pro.sh
+++ b/
forester/sh/x_msa_pro.sh
@@
-1,4
+1,4
@@
-re="(.+)_mafft_1000_g\.aln"
+re="(.+)_mafft_1000_l\.fasta"
for i in *
do
if test -f "$i"
for i in *
do
if test -f "$i"
@@
-7,7
+7,7
@@
do
then
name=${BASH_REMATCH[1]}
echo $name
then
name=${BASH_REMATCH[1]}
echo $name
- ruby /home/zma/git/forester/forester/ruby/evoruby/exe/msa_pro.rb -i=f -o=p -d -c -rr=0.5 -rsl=20 $i ${name}_mafft_1000_g_05_20
+ ruby /home/zma/git/forester/forester/ruby/evoruby/exe/msa_pro.rb -i=f -o=p -d -c -rr=0.5 -rsl=20 $i ${name}_mafft_1000_l_05_20
rc=$?
if [[ $rc != 0 ]]
then
rc=$?
if [[ $rc != 0 ]]
then