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[jalview.git]
/
forester
/
test_data
/
phyloxml_test_t1.xml
diff --git
a/forester/test_data/phyloxml_test_t1.xml
b/forester/test_data/phyloxml_test_t1.xml
index
a9b966d
..
c2e1d10
100644
(file)
--- a/
forester/test_data/phyloxml_test_t1.xml
+++ b/
forester/test_data/phyloxml_test_t1.xml
@@
-119,6
+119,9
@@
<sequence>
<name>CAEEL_XYZ</name>
</sequence>
<sequence>
<name>CAEEL_XYZ</name>
</sequence>
+ <events>
+ <duplications>1</duplications>
+ </events>
</clade>
<clade>
<name>node b</name>
</clade>
<clade>
<name>node b</name>
@@
-192,11
+195,14
@@
<name>bc seq</name>
<domain_architecture length="124">
<domain from="120" to="130" confidence="0.9" id=""> A </domain>
<name>bc seq</name>
<domain_architecture length="124">
<domain from="120" to="130" confidence="0.9" id=""> A </domain>
- <domain from="21" to="44" confidence="2144" id="pfam"> B </domain>
+ <domain from="21" to="44" confidence="0" id="pfam"> B </domain>
<domain to="43" confidence="1.0E-89" from="34" id=""> C </domain>
<domain to="43" confidence="1.0E-89" from="34" id=""> C </domain>
- <domain id="123" from="34" to="43" confidence="-1.3e-34"> D </domain>
+ <domain id="123" from="34" to="43" confidence="1.3e-34"> D </domain>
</domain_architecture>
</sequence>
</domain_architecture>
</sequence>
+ <events>
+ <speciations>1</speciations>
+ </events>
<date>
<value>433</value>
</date>
<date>
<value>433</value>
</date>