-
-jalviewjs_eclipse_root = ~/buildtools/eclipse/eclipse-jee-2019-06
-
-jalviewjs_utils_dir = utils/jalviewjs
-jalviewjs_eclipse_dropins_dir = eclipse/dropins
-jalviewjs_swingjs_zip = SwingJS-site.zip
-jalviewjs_libjs_dir = libjs
-jalviewjs_resource_dir = resources
-jalviewjs_site_resource_dir = site-resources
+eclipse_debug = false
+
+## IMPORTANT for headless build
+# to enable `gradle jalviewjs` headless build you MUST set
+# j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename
+# (or set to whatever value jalviewjs_j2s_alt_file_property is set to)
+# in your ./.j2s file
+# OR run the task `gradle jalviewjsEnableAltFileProperty` to do that for you (before headless build task)
+jalviewjs_j2s_alt_file_property = org.jalview.jalviewjsj2sfilename
+jalviewjs_j2s_alt_settings = build/jalviewjs/config/j2s
+
+# these are used for actual .j2s file to pass on to alt j2s file
+jalviewjs_j2s_settings = .j2s
+jalviewjs_j2s_alt_file_property_config = j2s.config.altfileproperty
+
+# for developing in Eclipse as IDE, set this to automatically copy current swingjs/net.sf.j2s.core.jar to your dropins dir
+jalviewjs_eclipseIDE_auto_copy_j2s_plugin = false
+# Override this in a local.properties file
+jalviewjs_eclipse_root = ~/buildtools/eclipse/jee-2019-09
+
+jalviewjs_eclipse_dropins_dir = utils/jalviewjs/eclipse/dropins
+jalviewjs_swingjs_zip = swingjs/SwingJS-site.zip
+jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core-j11.jar
+jalviewjs_libjs_dir = utils/jalviewjs/libjs
+jalviewjs_site_resource_dir = utils/jalviewjs/site-resources
+jalviewjs_classlists_dir = utils/jalviewjs/classlists
+jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt
+#jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace
+# these 3 files/dirs found in build/jalviewjs
+jalviewjs_eclipse_tmp_dropins_dir = eclipse_dropins
+jalviewjs_eclipse_workspace_location_file = eclipse_workspace_location