+flexmark_css = utils/doc/github.css
+
+channel_properties_dir = utils/channels
+channel_props = channel.props
+
+install4j_home_dir = ~/buildtools/install4j9
+install4j_copyright_message = ...
+install4j_bundle_id = org.jalview.jalview-desktop
+install4j_utils_dir = utils/install4j
+install4j_images_dir = utils/install4j
+install4j_template = install4j9_template.install4j
+install4j_info_plist_file_associations = file_associations_auto-Info_plist.xml
+install4j_installer_file_associations = file_associations_auto-install4j8.xml
+#install4j_DMG_uninstaller_app_files = uninstall_old_jalview_files.xml
+install4j_build_dir = build/install4j
+install4j_executable_name = jalviewg
+install4j_media_types = windows,macosArchive,unixArchive,unixInstaller
+install4j_faster = false
+install4j_application_categories = Science;Biology;Java;
+install4j_release_win_application_id = 6595-2347-1923-0725
+install4j_mac_icons_file = jalview_logo.icns
+install4j_windows_icons_file = jalview_logo.ico
+install4j_png_icon_file = jalview_logo.png
+install4j_background = jalview_logo_background_fade-640x480.png
+install4j_dmg_background = jalview_dmg_background-NON-RELEASE.png
+install4j_dmg_ds_store = jalview_dmg_DS_Store
+getdown_wrapper_script_dir = bin
+getdown_bash_wrapper_script = jalview.sh
+getdown_powershell_wrapper_script = jalview.ps1
+getdown_batch_wrapper_script = jalview.bat
+
+OSX_KEYSTORE =
+OSX_KEYPASS =
+JSIGN_SH = echo
+OSX_APPLEID =
+OSX_ALTOOLPASS =
+
+CHANNEL=LOCAL
+getdown_channel_base = https://www.jalview.org/getdown
+getdown_app_dir_release = release
+getdown_app_dir_alt = alt
+getdown_app_dir_java = jre
+getdown_install_dir = install
+getdown_rsync_dest = /Volumes/jalview/docroot/getdown
+reportRsyncCommand =
+RUNRSYNC=false
+
+bamboo_channelbase = https://builds.jalview.org/browse
+bamboo_planKey =
+bamboo_getdown_channel_suffix = /latest/artifact/shared/getdown-channel
+
+eclipse_codestyle_file = utils/eclipse/JalviewCodeStyle.xml
+eclipse_extra_jdt_prefs_file = utils/eclipse/org.eclipse.jdt.core.jalview.prefs
+eclipse_project_name = jalview
+eclipse_bin_dir = bin
+eclipse_debug = false
+
+## IMPORTANT for headless build
+# to enable `gradle jalviewjs` headless build you MUST set
+# j2s.config.altfileproperty = org.jalview.jalviewjsj2sfilename
+# (or set to whatever value jalviewjs_j2s_alt_file_property is set to)
+# in your ./.j2s file
+# OR run the task `gradle jalviewjsEnableAltFileProperty` to do that for you (before headless build task)
+jalviewjs_j2s_alt_file_property = org.jalview.jalviewjsj2sfilename
+jalviewjs_j2s_alt_settings = build/jalviewjs/config/j2s
+
+# these are used for actual .j2s file to pass on to alt j2s file
+jalviewjs_j2s_settings = .j2s
+jalviewjs_j2s_alt_file_property_config = j2s.config.altfileproperty
+
+# for developing in Eclipse as IDE, set this to automatically copy current swingjs/net.sf.j2s.core.jar to your dropins dir
+jalviewjs_eclipseIDE_auto_copy_j2s_plugin = false
+# Override this in a local.properties file
+jalviewjs_eclipse_root = ~/buildtools/eclipse/jee-2019-09
+
+jalviewjs_eclipse_dropins_dir = utils/jalviewjs/eclipse/dropins
+jalviewjs_swingjs_zip = swingjs/SwingJS-site.zip
+jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core-j11.jar
+jalviewjs_libjs_dir = utils/jalviewjs/libjs
+jalviewjs_site_resource_dir = utils/jalviewjs/site-resources
+jalviewjs_classlists_dir = utils/jalviewjs/classlists
+jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt
+#jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace
+# these 3 files/dirs found in build/jalviewjs
+jalviewjs_eclipse_tmp_dropins_dir = eclipse_dropins
+jalviewjs_eclipse_workspace_location_file = eclipse_workspace_location
+jalviewjs_site_dir = site
+# these dirs are subdirs of the site dir
+jalviewjs_swingjs_subdir = swingjs
+jalviewjs_j2s_subdir = swingjs/j2s
+jalviewjs_js_subdir = swingjs/js
+#jalviewjs_eclipseBuildArg = build
+jalviewjs_eclipse_build_arg = cleanBuild
+jalviewjs_server_port = 9001
+jalviewjs_server_wait = 30
+jalviewjs_server_resource = /jalview_bin_Jalview.html
+jalviewjs_core_name = _jalview
+jalviewjs_name = JalviewJS
+jalviewjs_core_key = core
+#jalviewjs_core_key = preloadCore
+jalviewjs_ignore_transpile_errors = true
+
+j2s.compiler.status = enable
+#j2s.site.directory = null ## site defined from buildDir+'/jalviewjs/'+jalviewjs_site_dir
+#j2s.log.methods.declared = j2s_methods_declared.log
+#j2s.log.methods.called = j2s_methods_called.log
+#a semicolon-separated list of package-level file paths to be excluded
+j2s.excluded.paths = test;testng;util
+#j2s.include.tests = true
+#j2s.testing = null
+#j2s.compiler.nonqualified.packages = null
+#j2s.compiler.nonqualified.classes = null
+#j2s.compiler.mode = debug
+#a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made
+#j2s.class.replacements = org.apache.logging.log4j.->jalview.javascript.log4j.
+j2s.template.html = utils/jalviewjs/template.html
+j2s_coretemplate_html = utils/jalviewjs/coretemplate.html
+#output file name for logging methods declared - delete the file to regenerate a listing
+#j2s.prop.j2s.log.methods.declared=swingjs/methodsDeclared_csv
+#output file name for logging methods called - delete the file to regenerate a listing
+#j2s.prop.j2s.log.methods_called=swingjs/methodsCalled_csv
+#if set, every instance of methods called will be logged
+#otherwise, only the first call to a method will be logged
+#output will be comma-separated: called method,caller class
+#j2s.prop.j2s.log.all.calls=true
+
+jalviewjs_j2s_transpile_stdout = j2s-transpile.out
+#jalviewjs_j2s_stderr = j2s-transpile.err # all going into out
+jalviewjs_j2s_to_console = true
+jalviewjs_closure_compiler = tools/closure_compiler.jar
+jalviewjs_j2s_closure_stdout = j2s-closure.out
+
+
+testp=gradle.properties