Merge branch 'releases/Release_2_11_4_Branch'

[jalview.git] / help / help / help.jhm

diff --git a/help/help/help.jhm b/help/help/help.jhm
index a2094f7..f69547f 100755 (executable)
--- a/help/help/help.jhm
+++ b/help/help/help.jhm
@@ -89,6 +89,9 @@
    <mapID target="trees" url="html/calculations/tree.html"/>
    <mapID target="treeviewer" url="html/calculations/treeviewer.html"/>
    <mapID target="sorting" url="html/calculations/sorting.html"/>
    <mapID target="trees" url="html/calculations/tree.html"/>
    <mapID target="treeviewer" url="html/calculations/treeviewer.html"/>
    <mapID target="sorting" url="html/calculations/sorting.html"/>

+   <mapID target="pasimap" url="html/calculations/pasimap.html"/>
+   <mapID target="proteinss" url="html/calculations/protssconsensus.html"/>
+   <mapID target="proteinssanaly" url="html/calculations/tree.html#ssim"/>

    <mapID target="pca" url="html/calculations/pca.html"/>
    <mapID target="pairwise" url="html/calculations/pairwise.html"/>
    <mapID target="redundancy" url="html/calculations/redundancy.html"/>
    <mapID target="pca" url="html/calculations/pca.html"/>
    <mapID target="pairwise" url="html/calculations/pairwise.html"/>
    <mapID target="redundancy" url="html/calculations/redundancy.html"/>

@@ -161,7 +164,10 @@
    <mapID target="pdbfts" url="html/features/pdbsequencefetcher.html#pdbfts" />
    <mapID target="siftsmapping" url="html/features/siftsmapping.html" />
    <mapID target="pdbchooser" url="html/features/structurechooser.html" />
    <mapID target="pdbfts" url="html/features/pdbsequencefetcher.html#pdbfts" />
    <mapID target="siftsmapping" url="html/features/siftsmapping.html" />
    <mapID target="pdbchooser" url="html/features/structurechooser.html" />

+   <mapID target="structureandpaefromfile" url="html/features/structurechooser.html#loadfromfile" />

    <mapID target="structuresvia3dbeacons" url="html/features/structurechooser.html#3dbeaconssearch" />   
    <mapID target="structuresvia3dbeacons" url="html/features/structurechooser.html#3dbeaconssearch" />   

+   <mapID target="workingwithpae" url="html/features/paematrices.html" />
+   <mapID target="paematrixformat" url="html/io/paematrixformat.html" />

    <mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
    <mapID target="biojsmsa" url="html/features/biojsmsa.html" />
    
    <mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
    <mapID target="biojsmsa" url="html/features/biojsmsa.html" />