Jalview command line</a> will execute the contents of <script>.
<script> may be a file, a URL, or alternatively if it is
"STDIN" then the standard input will be used.<br> <em>Note:
Jalview command line</a> will execute the contents of <script>.
<script> may be a file, a URL, or alternatively if it is
"STDIN" then the standard input will be used.<br> <em>Note:
window which is currently being looked at by the user</li>
</ul></li>
<li><strong>currentAlFrame</strong> - this is only defined when
window which is currently being looked at by the user</li>
</ul></li>
<li><strong>currentAlFrame</strong> - this is only defined when
returns the first alignment window created after acting on the
other arguments passed on the command line.</li>
</ul>
returns the first alignment window created after acting on the
other arguments passed on the command line.</li>
</ul>