- If you save your Jalview session as a project file, the state of any
- open Pymol windows will also be saved, and can be reopened by
- loading the project file on any machine with Pymol installed.
- </p>
- <p>
- <strong>Known Limitations</strong><br /> Jalview provides an easy way
- to employ Pymol for linked analysis of sequences and structures in the
- same way as <a href="chimera.html">Chimera and ChimeraX</a>. There are
- some limitations, however:
- </p>
- <ul>
- <li>Pymol does not support some forms of legacy structural data
- (e.g. the 1A70 C-alpha only PDB file included in the Jalview example
- project).</li>
- <li>Pymol to Jalview communication does not support transfer of
- properties or highlighting sequence regions corresponding to
- structure selections or mouse-overs in Pymol.</li>
- </ul>
+ <strong>Known Limitations</strong><br />
+ </p>
+ <ul>
+ <li>Pymol does not support some forms of legacy structural data
+ (e.g. the 1A70 C-alpha only PDB file included in the Jalview
+ example project).</li>
+ <li>Pymol to Jalview communication does not support transfer of
+ properties or highlighting sequence regions corresponding to
+ structure selections or mouse-overs in Pymol.</li>
+ </ul>