+ <td width="60" align="center" nowrap><strong><a
+ id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.0">.0</a><br />
+ <em>27/03/2020</em></strong></td>
+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-3187 -->Option to show 'virtual' codon features on
+ protein (or vice versa)
+ <ul>
+ <li>
+ <!-- JAL-3304 -->Option to export virtual features if
+ shown
+ </li>
+ <li>
+ <!-- JAL-3302 -->Option to transfer virtual features to
+ Chimera
+ </li>
+ </ul>
+ </li>
+ <li>
+ <!-- JAL-3121 -->Feature attributes from VCF files can be exported and re-imported as GFF3 files
+ </li>
+ <li>
+ <!-- JAL-3376 -->Capture VCF "fixed column" values POS,
+ ID, QUAL, FILTER as Feature Attributes
+ </li>
+ <li>
+ <!-- JAL-3375 -->More robust VCF numeric data field validation while parsing
+ </li>
+ <li>
+ <!-- JAL-3533 -->Feature Settings dialog keeps same screen position if reopened
+ </li>
+ <li>
+ <!-- JAL-3538 -->Font anti-aliasing in alignment views enabled by default
+ </li>
+ <li>
+ <!-- JAL-3468 -->Very long feature descriptions truncated in tooltips and menus
+ </li>
+ <li>
+ <!-- JAL-3549 -->Warn if Sort by Score or Density attempted with no feature types visible
+ </li>
+ </ul><em>Jalview Installer</em>
+ <ul>
+ <li>
+ <!-- JAL-3449 -->Versions for install4j and getdown and installer template version reported
+ in console (may be null when Jalview launched as executable jar or via conda)
+ </li>
+ <li>
+ <!-- JAL-3393 -->Layout improvements for OSX .dmg Finder and higher quality background images
+ </li>
+ <li>
+ <!-- JAL-3394 -->New installer/application launcher generated with install4j 8.0.4
+ </li>
+ <li>
+ <!-- JAL-3420 -->Jalview File Associations shown for Unix Platforms</li>
+ <li>
+ <!-- JAL-3477 -->Improved defaults for maximum memory setting when running on large memory machines</li>
+ </ul> <em>Release processes</em>
+ <ul>
+ <li>
+ <!-- JAL-3508 -->New point release version scheme - 2.11.1.0
+ </li>
+ </ul> <em>Build System</em>
+ <ul>
+ <li>
+ <!-- JAL-3510 -->Clover updated to 4.4.1
+ </li>
+ <li>
+ <!-- JAL-3513 -->Test code included in Clover coverage
+ report
+ </li>
+ </ul>
+ </td>
+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-3412 -->ID margins for CDS and Protein views not equal when split frame is first opened
+ </li>
+ <li>
+ <!-- JAL-3296 -->Sequence position numbers in status bar not correct after editing a sequence's start position
+ </li>
+ <li>
+ <!-- JAL-3377 -->Alignment is misaligned in wrapped mode
+ with annotation and exceptions thrown when only a few
+ columns shown in wrapped mode
+ </li>
+ <li>
+ <!-- JAL-3386 -->Sequence IDs missing in headless export of
+ wrapped alignment figure with annotations
+ </li>
+ <li>
+ <!-- JAL-3388-->Sorting Structure Chooser table by Sequence
+ ID fails with ClassCastException
+ </li>
+ <li>
+ <!-- JAL-3389 -->Chimera session not restored from Jalview
+ Project
+ </li>
+ <li>
+ <!-- JAL-3441 -->Double-click on 'Show feature' checkbox in
+ feature settings dialog also selects columns
+ </li>
+ <li>
+ <!-- JAL-3473 -->SpinnerNumberModel causes
+ IllegalArgumentException in some circumstances
+ </li>
+ <li>
+ <!-- JAL-3534 -->Multiple feature settings dialogs can be opened for a view
+ </li>
+ <li>
+ <!-- JAL-2764 -->Feature Settings dialog is orphaned if alignment window is closed
+ </li>
+ <li>
+ <!-- JAL-3406 -->Credits missing some authors in Jalview
+ help documentation for 2.11.0 release
+ </li>
+ </ul> <em>Java 11 Compatibility issues</em>
+ <ul>
+ <li>
+ <!-- JAL-2987 -->OSX - Can't view some search results in PDB/Uniprot search panel
+ </li>
+ </ul> <em>Installer</em>
+ <ul>
+ <li><!-- JAL-3447 -->Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
+ </li>
+ </ul> <em>Repository and Source Release</em>
+ <ul>
+ <li>
+ <!-- JAL-3474 -->removed obsolete .cvsignore files from repository
+ </li>
+ <li>
+ <!-- JAL-3541 -->Clover report generation running out of memory
+ </li>
+ </ul>
+ <em>New Known Issues</em>
+ <ul>
+ <li>
+ <!-- JAL-3523 -->OSX - Current working directory not
+ preserved when Jalview.app launched with parameters from
+ command line
+ </li>
+ <li>
+ <!-- JAL-3525 -->Sequence IDs aligned to wrong margin and
+ clipped in headless figure export when Right Align option
+ enabled
+ </li>
+ <li>
+ <!-- JAL-3542 -->Jalview Installation type always reports 'Source' in console output
+ </li>
+ </ul>
+ </td>
+ </tr>
+ <tr>