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JAL-3574 JAL-3407 release notes
[jalview.git]
/
help
/
help
/
html
/
releases.html
diff --git
a/help/help/html/releases.html
b/help/help/html/releases.html
index
205a129
..
9442641
100755
(executable)
--- a/
help/help/html/releases.html
+++ b/
help/help/html/releases.html
@@
-58,13
+58,13
@@
li:before {
<tr>
<td width="60" align="center" nowrap><strong><a
id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.0">.0</a><br />
<tr>
<td width="60" align="center" nowrap><strong><a
id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.0">.0</a><br />
- <em>30/03/2020</em></strong></td>
+ <em>22/04/2020</em></strong></td>
<td align="left" valign="top">
<ul>
<li>
<td align="left" valign="top">
<ul>
<li>
- <!-- JAL-3187,JAL-3305,JAL-3304,JAL-3302 -->Map 'virtual'
+ <!-- JAL-3187,JAL-3305,JAL-3304,JAL-3302,JAL-3567 -->Map 'virtual'
codon features shown on protein (or vice versa) for display
codon features shown on protein (or vice versa) for display
- in alignments, on structure views and for export.
+ in alignments, on structure views, in feature reports and for export.
</li>
<li>
<!-- JAL-3121 -->Feature attributes from VCF files can be
</li>
<li>
<!-- JAL-3121 -->Feature attributes from VCF files can be
@@
-83,6
+83,10
@@
li:before {
position if reopened
</li>
<li>
position if reopened
</li>
<li>
+ <!-- JAL-3535 -->Feature Settings dialog title includes name
+ of associated view
+ </li>
+ <li>
<!-- JAL-3538 -->Font anti-aliasing in alignment views
enabled by default
</li>
<!-- JAL-3538 -->Font anti-aliasing in alignment views
enabled by default
</li>
@@
-94,6
+98,9
@@
li:before {
<!-- JAL-3549 -->Warn if Sort by Score or Density attempted
with no feature types visible
</li>
<!-- JAL-3549 -->Warn if Sort by Score or Density attempted
with no feature types visible
</li>
+ <li>
+ <!-- JAL-3574 -->Improved support for filtering feature attributes with large integer values
+ </li>
</ul><em>Jalview Installer</em>
<ul>
<li>
</ul><em>Jalview Installer</em>
<ul>
<li>
@@
-115,6
+122,9
@@
li:before {
<li>
<!-- JAL-3508 -->New point release version scheme - 2.11.1.0
</li>
<li>
<!-- JAL-3508 -->New point release version scheme - 2.11.1.0
</li>
+ <li>
+ <!-- JAL-3577 -->'Jalview Test' installers/apps for easier access to test-release channel builds
+ </li>
</ul> <em>Build System</em>
<ul>
<li>
</ul> <em>Build System</em>
<ul>
<li>
@@
-132,11
+142,24
@@
li:before {
to stdout containing the consensus sequence for each
alignment in a Jalview session
</li>
to stdout containing the consensus sequence for each
alignment in a Jalview session
</li>
+ <li>
+ <!-- JAL-3578 -->ComputePeptideVariants.groovy to translate
+ genomic sequence_variant annotation from CDS as
+ missense_variant or synonymous_variant on protein products.
+ </li>
</ul>
</td>
<td align="left" valign="top">
<ul>
<li>
</ul>
</td>
<td align="left" valign="top">
<ul>
<li>
+ <!-- JAL-3581 -->Hidden sequence markers still visible when
+ 'Show hidden markers' option is not ticked
+ </li>
+ <li>
+ <!-- JAL-3571 -->Feature Editor dialog can be opened when
+ 'Show Sequence Features' option is not ticked
+ </li>
+ <li>
<!-- JAL-3549 -->Undo 'Null' operation shown after sort by
buttons in Feature Settings dialog are clicked when no
features are visible
<!-- JAL-3549 -->Undo 'Null' operation shown after sort by
buttons in Feature Settings dialog are clicked when no
features are visible
@@
-186,6
+209,11
@@
li:before {
<!-- JAL-3406 -->Credits missing some authors in Jalview
help documentation for 2.11.0 release
</li>
<!-- JAL-3406 -->Credits missing some authors in Jalview
help documentation for 2.11.0 release
</li>
+ <li>
+ <!-- JAL-3529 -->Export of Pfam alignment as Stockholm
+ includes Pfam ID as sequence's accession rather than its
+ Uniprot Accession
+ </li>
</ul> <em>Java 11 Compatibility issues</em>
<ul>
<li>
</ul> <em>Java 11 Compatibility issues</em>
<ul>
<li>
@@
-228,6
+256,9
@@
li:before {
<!-- JAL-3562 -->Test Suite: Certain Functional tests fail on jalview's
bamboo server but run fine locally.
</li>
<!-- JAL-3562 -->Test Suite: Certain Functional tests fail on jalview's
bamboo server but run fine locally.
</li>
+ <li>
+ <!-- JAL-3574 -->Filtering features by genomic location (POS) is broken by rounding
+ </li>
</ul>
</td>
</tr>
</ul>
</td>
</tr>