+ <li>
+ <!-- JAL-3616 JAL-3551 JAL-2322 -->Support for viewing 3D
+ structures with ChimeraX and Pymol in addition to Jmol and
+ Chimera.
+ </li>
+ <li>
+ <!-- JAL-3829 -->Discover 3D structure data for sequences
+ with Uniprot references via 3D-Beacons
+ </li>
+ <li>
+ <!-- JAL-3391 -->Rank and select available structures for
+ Uniprot sequences according to number of residues in
+ structure mapped to positions involved in the alignment
+ </li>
+ <li>
+ <!-- JAL-3503 -->New Preferences tab for adjusting Jalview's
+ memory settings at launch
+ </li>
+ <li>
+ <!-- JAL-3144 -->Reverted to Jalview 'classic' drop-down
+ menu for selecting which database to fetch from in sequence
+ fetcher dialog.
+ </li>
+ <li>
+ <!-- JAL-2226 -->Structure annotation rows for all mapped
+ chains in 3D structures are included in the 'Reference
+ Annotation' for a sequence
+ </li>
+ <li>
+ <!-- JAL-1260 -->Import Genbank and EMBL format flatfiles
+ </li>
+ <li>
+ <!-- JAL-3821 -->ENA record's mol_type honoured so RNA
+ molecules imported from ENA records are shown as RNA
+ <li>
+ <!-- JAL-3863 -->Support for Canonical Uniprot IDs
+ </li>
+ <li>
+ <!-- JAL-3881 -->Sequence IDs split on '_' as well as other
+ non-alphanumerics when discovering database references with
+ 'Fetch DB Refs'
+ </li>
+ <li>
+ <!-- JAL-3884 -->Suppressed harmless exceptions output to
+ Console whilst discovering database references for a
+ sequence
+ </li>
+ <li>
+ <!-- JAL-3204 -->Updated Jalview bindings for Uniprot XML
+ schema
+ </li>
+ <li>
+ <!-- JAL-3926 -->Uniprot and PDBe autosearch option is
+ disabled by default
+ </li>
+ <li>
+ <!-- JAL-3530 -->-nowebservicediscovery command line
+ argument to prevent automatic discovery of analysis
+ webservices on launch
+ </li>
+ <li>
+ <!-- JAL-3618 -->Allow 'App' directories to be opened when
+ locating Chimera, ChimeraX or Pymol binaries via filechooser
+ opened by double clicking the Structure Preferences' path
+ textbox
+ </li>
+ <li>
+ <!-- JAL-3632 JAL-3633 -->support for HTTP/S access via
+ proxies that require authentication
+ </li>
+ <li>
+ <!-- JAL-3103 -->New mechanism for opening URLs with system
+ default browser (works on OSX and Linux as well as Windows)
+ </li>
+ <li>
+ <!-- JAL-3837 -->GPL license info on splash screen and About
+ text
+ </li>
+ </ul>
+ <em>Jalview Native App</em>
+ <ul>
+ <li>
+ <!-- JAL- -->New Jalview Develop app - making it even easier
+ to get at Jalview's development builds
+ </li>
+ <li>
+ <!-- JAL-3594 -->New splashscreens for Jalview, Jalview Test
+ and Jalview Develop applications.
+ </li>
+ <li>
+ <!-- JAL-3728 -->Jalview logos shown for Jalview Java
+ Console and other window widgets in taskbar and dock rather
+ than anonymous 'Java' icons
+ </li>
+ <li>
+ <!-- JAL-3608 -->Options to allow user to choose the (Swing) Look and Feel (LaF) used by Jalview
+ </li>
+ <li>
+ <!-- JAL-3552, JAL-3609 -->Metal LaF used to improved operation on Linux Ubuntu with
+ HiDPI display in Java 11 (still known issues with HiDPI screens in java
+ 8 and 11. see <a
+ href="https://issues.jalview.org/browse/JAL-3137">JAL-3137</a>)
+ </li>
+ <li>
+ <!-- JAL-3830 -->New command line launcher scripts (.sh, .ps1, .bat) usable on
+ macOS, Linux/Unix, Windows and documentation in Help. Installer wizard has option
+ to add this to PATH, or link to it in your PATH.
+ </li>
+ <li>
+ <!-- JAL-3633 -->Getdown launcher inherits HTTP/S proxy
+ configuration from jalview_properties
+ </li>
+ </ul> <em>JalviewJS</em>
+ <ul>
+ <li>
+ <!-- JAL-3624 -->PDB structures mapped to Uniprot Sequences with
+ SIFTS
+ </li>
+ <li>
+ <!-- JAL-3208 -->setprop commandline argument reinstated for JalviewJS only
+ </li>
+ <li>
+ <!-- JAL-3163 -->Missing message bundle keys are only
+ reported once per key (avoids excessive log output in js
+ console)
+ </li>
+ <li>
+ <!-- JAL-3168 -->Feature type is included in the title of
+ the Feature Settings' Colour Chooser dialog
+ </li>
+ <li></li>
+ </ul> <em>Development</em>
+ <ul>
+ <li>
+ <!-- -->First integrated JalviewJS and Jalview release
+ </li>