+ <tocitem text="by Percentage Identity" target="colours.pid"/> \r
+ <tocitem text="User Defined" target="colours.user"/>\r
+ <tocitem text="Above Percentage Identity" target="colours.abovepid"/>\r
+ <tocitem text="By conservation" target="colours.conservation"/>\r
+ </tocitem>\r
+ <tocitem text="Calculations" target="calculations" expand="false">\r
+ <tocitem text="Sorting alignments" target="sorting"/>\r
+ <tocitem text="Calculating trees" target="trees"/>\r
+ <tocitem text="Principal Component Analysis" target="pca"/>\r
+ <tocitem text="Pairwise Alignments" target="pairwise"/>\r
+ <tocitem text="Remove Redundancy" target="redundancy"/>\r
+ </tocitem>\r
+ <tocitem text="Window Menus" target="menus" expand="false">\r
+ <tocitem text="Desktop Window" target="desktopMenu"/>\r
+ <tocitem text="Alignment Window" target="alMenu">\r
+ <tocitem text="File Menu" target="alwFile"/>\r
+ <tocitem text="Edit Menu" target="alwEdit"/> \r
+ <tocitem text="Colour Menu" target="alwColour"/>\r
+ <tocitem text="Calculation Menu" target="alwCalc"/>\r
+ <tocitem text="Web Service Menu" target="wsMenu"/>\r
+ <tocitem text="Annotation Menus" target="annotMenus"/>\r
+ <tocitem text="Popup Menu" target="popMenu"/>\r
+ </tocitem>\r
+\r