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Feature Settings
[jalview.git]
/
help
/
helpTOC.xml
diff --git
a/help/helpTOC.xml
b/help/helpTOC.xml
index
9265599
..
5dec601
100755
(executable)
--- a/
help/helpTOC.xml
+++ b/
help/helpTOC.xml
@@
-3,9
+3,11
@@
<toc version="1.0">
\r
<tocitem text="Jalview Documentation" target="home" expand="true" >
\r
<tocitem text="What's new" target="new" expand="false">
\r
<toc version="1.0">
\r
<tocitem text="Jalview Documentation" target="home" expand="true" >
\r
<tocitem text="What's new" target="new" expand="false">
\r
- <tocitem text="MAFFT Alignment" target="mafft"/>
\r
<tocitem text="DAS Feature Fetching" target="das.settings"/>
\r
<tocitem text="DAS Feature Fetching" target="das.settings"/>
\r
- <tocitem text="Hide Regions" target="hiddenRegions"/>
\r
+ <tocitem text="Hide Regions" target="hiddenRegions"/>
\r
+ <tocitem text="Tree/PCA Input Data" target="recoverInputdata"/>
\r
+ <tocitem text="Multiple Alignment Subjobs" target="msaservice"/>
\r
+ <tocitem text="MAFFT Alignment" target="mafft"/>
\r
</tocitem>
\r
<tocitem text="Release History" target="release"/>
\r
<tocitem text="Editing Alignments" target ="edit"/>
\r
</tocitem>
\r
<tocitem text="Release History" target="release"/>
\r
<tocitem text="Editing Alignments" target ="edit"/>
\r
@@
-19,13
+21,15
@@
<tocitem text="Sequence Feature Settings" target="seqfeatures.settings"/>
\r
<tocitem text="Sequence Features File" target="features.fileformat"/>
\r
<tocitem text="User Defined Sequence Features" target="search"/>
\r
<tocitem text="Sequence Feature Settings" target="seqfeatures.settings"/>
\r
<tocitem text="Sequence Features File" target="features.fileformat"/>
\r
<tocitem text="User Defined Sequence Features" target="search"/>
\r
- <tocitem text="DAS Features Settings" target="das.settings"/>
\r
+ <tocitem text="DAS Features Settings" target="das.viewing"/>
\r
</tocitem>
\r
<tocitem text="Web Services" target="webservice" expand="false">
\r
</tocitem>
\r
<tocitem text="Web Services" target="webservice" expand="false">
\r
+ <tocitem text="Sequence Alignment" target="msaservice" expand="false">
\r
<tocitem text="Clustal Alignment" target="clustal"/>
\r
<tocitem text="Muscle Alignment" target="muscle"/>
\r
<tocitem text="MAFFT Alignment" target="mafft"/>
\r
<tocitem text="Clustal Alignment" target="clustal"/>
\r
<tocitem text="Muscle Alignment" target="muscle"/>
\r
<tocitem text="MAFFT Alignment" target="mafft"/>
\r
- <tocitem text="JNet Prediction" target="jnet"/>
\r
+ </tocitem>
\r
+ <tocitem text="Secondary Structure Prediction" target="jnet"/>
\r
</tocitem>
\r
<tocitem text="Colour Schemes" target="colours" expand="false">
\r
<tocitem text="ClustalX" target="colours.clustal"/>
\r
</tocitem>
\r
<tocitem text="Colour Schemes" target="colours" expand="false">
\r
<tocitem text="ClustalX" target="colours.clustal"/>
\r