git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
firefox now default for unixen.
[jalview.git]
/
help
/
helpTOC.xml
diff --git
a/help/helpTOC.xml
b/help/helpTOC.xml
index
af9a16a
..
c0b0adc
100755
(executable)
--- a/
help/helpTOC.xml
+++ b/
help/helpTOC.xml
@@
-2,17
+2,17
@@
<!DOCTYPE toc PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN" "http://java.sun.com/products/javahelp/toc_1_0.dtd">
\r
<toc version="1.0">
\r
<tocitem text="Jalview Documentation" target="home" expand="true" >
\r
<!DOCTYPE toc PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN" "http://java.sun.com/products/javahelp/toc_1_0.dtd">
\r
<toc version="1.0">
\r
<tocitem text="Jalview Documentation" target="home" expand="true" >
\r
- <tocitem text="Whats new" target="new" expand="false">
\r
+ <tocitem text="What's new" target="new" expand="false">
\r
<tocitem text="Search" target="search"/>
\r
<tocitem text="Wrap Alignment" target="wrap"/>
\r
<tocitem text="Overview Window" target ="overview"/>
\r
<tocitem text="Sequence Features" target ="seqfeatures"/>
\r
</tocitem>
\r
<tocitem text="Search" target="search"/>
\r
<tocitem text="Wrap Alignment" target="wrap"/>
\r
<tocitem text="Overview Window" target ="overview"/>
\r
<tocitem text="Sequence Features" target ="seqfeatures"/>
\r
</tocitem>
\r
+ <tocitem text="Input /Output" target="io"/>
\r
+ <tocitem text="Editing Alignment" target ="edit"/>
\r
<tocitem text="Web Services" target="webservice" expand="false">
\r
<tocitem text="Clustal Alignment" target="clustal"/>
\r
</tocitem>
\r
<tocitem text="Web Services" target="webservice" expand="false">
\r
<tocitem text="Clustal Alignment" target="clustal"/>
\r
</tocitem>
\r
- <tocitem text="Input /Output" target="io"/>
\r
- <tocitem text="Editing Alignment" target ="edit"/>
\r
<tocitem text="Colour Schemes" target="colours" expand="false">
\r
<tocitem text="ClustalX" target="colours.clustal"/>
\r
<tocitem text="Zappo" target="colours.zappo"/>
\r
<tocitem text="Colour Schemes" target="colours" expand="false">
\r
<tocitem text="ClustalX" target="colours.clustal"/>
\r
<tocitem text="Zappo" target="colours.zappo"/>
\r
@@
-29,13
+29,18
@@
<tocitem text="Above Percentage Identity" target="colours.abovepid"/>
\r
<tocitem text="By conservation" target="colours.conservation"/>
\r
</tocitem>
\r
<tocitem text="Above Percentage Identity" target="colours.abovepid"/>
\r
<tocitem text="By conservation" target="colours.conservation"/>
\r
</tocitem>
\r
- <tocitem text="Calculations" expand="false">
\r
- <tocitem text="Calculating trees" target="trees"/>
\r
- <tocitem text="Conservation" target="conservation"/>
\r
+ <tocitem text="Calculations" target="calculations" expand="false">
\r
+ <tocitem text="Sorting alignments" target="sorting"/>
\r
+ <tocitem text="Calculating trees" target="trees"/>
\r
<tocitem text="Principal Component Analysis" target="pca"/>
\r
<tocitem text="Pairwise Alignments" target="pairwise"/>
\r
<tocitem text="Remove Redundancy" target="redundancy"/>
\r
</tocitem>
\r
<tocitem text="Principal Component Analysis" target="pca"/>
\r
<tocitem text="Pairwise Alignments" target="pairwise"/>
\r
<tocitem text="Remove Redundancy" target="redundancy"/>
\r
</tocitem>
\r
+ <tocitem text="Menus" target="menus" expand="false">
\r
+ <tocitem text="Desktop Menu" target="desktopMenu"/>
\r
+ <tocitem text="Alignment Menu" target="alMenu"/>
\r
+ <tocitem text="Popup Menu" target="popMenu"/>
\r
+ </tocitem>
\r
</tocitem>
\r
<tocitem text="Useful information" expand="false">
\r
<tocitem text="Amino Acid Table" target="aminoAcids"/>
\r
</tocitem>
\r
<tocitem text="Useful information" expand="false">
\r
<tocitem text="Amino Acid Table" target="aminoAcids"/>
\r