+ <tocitem text="Alignment Annotations" target ="alannotation" expand="false">\r
+ <tocitem text="Conservation" target="calcs.alconserv"/>\r
+ <tocitem text="Quality" target="calcs.alquality"/>\r
+ <tocitem text="Consensus" target="calcs.consensus"/>\r
+ <tocitem text="Annotations File Format" target="annotations.fileformat"/>\r
+ </tocitem>\r
+ <tocitem text="Window Menus" target="menus" expand="false">\r
+ <tocitem text="Desktop Window" target="desktopMenu"/>\r
+ <tocitem text="Alignment Window" target="alMenu">\r
+ <tocitem text="File Menu" target="alwFile"/>\r
+ <tocitem text="Edit Menu" target="alwEdit"/> \r
+ <tocitem text="View Menu" target="alwView"/> \r
+ <tocitem text="Colour Menu" target="alwColour"/>\r
+ <tocitem text="Calculation Menu" target="alwCalc"/>\r
+ <tocitem text="Web Service Menu" target="wsMenu"/>\r
+ <tocitem text="Annotation Menus" target="annotMenus"/>\r
+ <tocitem text="Popup Menu" target="popMenu"/>\r
+ </tocitem>\r
+ </tocitem>\r
+ <tocitem text="Memory Settings" target="memory" expand="false">\r
+ <tocitem text="JNLP with extra memory parameters" target="jalviewjnlp"/>\r
+ </tocitem>\r