JAL-958

[jalview.git] / help / html / calculations / consensus.html

diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html
index 71bd90f..d0c524f 100644 (file)
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -31,11 +31,16 @@
 the consensus annotation label to copy the alignment's consensus sequence to the 
 clipboard. 
 
 the consensus annotation label to copy the alignment's consensus sequence to the 
 clipboard. 
 

-<p><strong>Sequence logo</strong></p> 
-By clicking on the label you can also activate the sequence logo. It
-indicates the relative amount of residues per column which can be
-estimated by it's size in the logo. The tooltip of a column gives the
-exact numbers for all occuring residues.
-</p>
+<p><strong>Sequence logo</strong></p>
+       By clicking on the label you can also activate the sequence logo. It
+       indicates the relative amount of residues per column which can be
+       estimated by it's size in the logo. The tooltip of a column gives the
+       exact numbers for all occuring residues.
+       <br />If columns of the alignment are very diverse, then it can
+       sometimes be difficult to see the sequence logo - in this case, right
+       click on the annotation row label and select
+       <strong>Normalise Consensus Logo</strong> to scale all columns of the
+       logo to the same height.
+       </p>

 </body>
 </html>
 </body>
 </html>