-</p>
-<p><strong><a name="menus">
-File Menu</a></strong></p>
-<p>This menu allows the displayed tree to be saved as a Newick tree
-file (Save→Newick File), printed or exported as an image (PNG) or
-Postscript file. Finally, data used to calculate the tree can be
-retrieved with the 'Input Data...' entry.
-</p>
-<p><strong>View Menu</strong></p>
-<p>When the tree viewer is opened, it displays all the annotation
-associated with a tree. Trees calculated by Jalview have branch
-lengths, which correspond to the distance measure used to construct
-the tree. Tree imported from outside may also contain bootstrap information,
-and additional leaves from sequences not present in the associated
-alignment.
-</p>
-<p>The view menu mostly contains options controlling the way a tree is
-rendered and labeled:
-<ul>
-<li><strong>Fit to Window</strong><p>
-The tree layout will be scaled to fit in the display
-window. You may need to reduce the font size to minimise the leaf
-label overlap when this option is selected.
-</p></li>
-<li><strong>Font Size ...</strong><em>n</em><p>
-Brings up a dialog box to set the font size for the leaf
-names. <em>n</em> is the current font size.
-</p></li>
-<li><strong>Show Distances</strong><p>
-Labels each branch or leaf with its associated branch
-length.</p></li>
-<li><strong>Show Bootstrap values</strong><p>
-Labels each branch or leaf with its associated bootstrap value.
-</p></li>
-<li><strong>Mark unlinked leaves</strong><p>
-Toggles the display of a '*' at the beginning of a leaf label to
-indicate that there is no sequence corresponding to that leaf in the
-associated alignment.
-</p></li>
- <li><strong>Sort Alignment By Tree</strong>
- <p>
- Sorts any associated alignment views using the current tree. (<em>Only
- available in the Jalview Desktop</em>)
- </p>
- </li>
- <li><strong>Associate Leaves with ...</strong>
- <p>
- Only visible when there are <a href="../features/multipleviews.html">multiple
- views</a> of the same alignment to show and edit which alignment views
- are associated with the leaves of the displayed tree.
- </p>
- </ul>
-</p>
+ </p>
+ <p>
+ <strong><a name="menus"> File Menu</a></strong>
+ </p>
+ <p>This menu allows the displayed tree to be saved as a Newick
+ tree file (Save→Newick File), printed or exported as an image
+ (PNG) or Postscript file. Finally, data used to calculate the tree
+ can be retrieved with the 'Input Data...' entry.</p>
+ <p>
+ <strong>View Menu</strong>
+ </p>
+ <p>When the tree viewer is opened, it displays all the annotation
+ associated with a tree. Trees calculated by Jalview have branch
+ lengths, which correspond to the distance measure used to construct
+ the tree. Tree imported from outside may also contain bootstrap
+ information, and additional leaves from sequences not present in the
+ associated alignment.</p>
+ <p>The view menu mostly contains options controlling the way a
+ tree is rendered and labeled:
+ <ul>
+ <li><strong>Fit to Window</strong>
+ <p>The tree layout will be scaled to fit in the display window.
+ You may need to reduce the font size to minimise the leaf label
+ overlap when this option is selected.</p></li>
+ <li><strong>Font Size ...</strong><em>n</em>
+ <p>
+ Brings up a dialog box to set the font size for the leaf names.
+ <em>n</em> is the current font size.
+ </p></li>
+ <li><strong>Show Distances</strong>
+ <p>Labels each branch or leaf with its associated branch length.</p></li>
+ <li><strong>Show Bootstrap values</strong>
+ <p>Labels each branch or leaf with its associated bootstrap
+ value.</p></li>
+ <li><strong>Mark unlinked leaves</strong>
+ <p>Toggles the display of a '*' at the beginning of a leaf label
+ to indicate that there is no sequence corresponding to that leaf
+ in the associated alignment.</p></li>
+ <li><strong>Sort Alignment By Tree</strong>
+ <p>
+ Sorts any associated alignment views using the current tree. (<em>Only
+ available in the Jalview Desktop</em>)
+ </p></li>
+ <li><strong>Associate Leaves with ...</strong>
+ <p>
+ Only visible when there are <a
+ href="../features/multipleviews.html"
+ >multiple views</a> of the same alignment to show and edit which
+ alignment views are associated with the leaves of the displayed
+ tree.
+ </p>
+ </ul>
+ </p>