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annotation and seqs vectors are protected members for use by file parsers for adding...
[jalview.git]
/
help
/
html
/
features
/
annotation.html
diff --git
a/help/html/features/annotation.html
b/help/html/features/annotation.html
index
447961e
..
0c0ccfc
100755
(executable)
--- a/
help/html/features/annotation.html
+++ b/
help/html/features/annotation.html
@@
-11,8
+11,9
@@
<p>Web services can also add annotation to an alignment (see the
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<a href="../webServices/jnet.html">JNet web service</a>), and as of Jalview 2.08 quantitative and symbolic
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annotations can be added to an alignment via an <a href="annotationsFormat.html">Annotations
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<p>Web services can also add annotation to an alignment (see the
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<a href="../webServices/jnet.html">JNet web service</a>), and as of Jalview 2.08 quantitative and symbolic
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annotations can be added to an alignment via an <a href="annotationsFormat.html">Annotations
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- File</a> for more details.</p>
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-
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+ File</a> dragged into the alignment window or loaded from the
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+ alignment's file menu.</p>
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+<p><strong>Interactive Alignment Annotation</strong></p>
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<p>
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Annotation rows are added using the <strong>Annotation Label</strong>
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menu, which is obtained by clicking anywhere on the annotation row labels
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<p>
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Annotation rows are added using the <strong>Annotation Label</strong>
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menu, which is obtained by clicking anywhere on the annotation row labels
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@@
-79,6
+80,8
@@
rows is not possible. If you save
your annotation as a Jalview file, however, it will be reloaded with user
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annotations at the top (nearest the alignment), above any of the
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automatically generated Conservation, Quality or consensus
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your annotation as a Jalview file, however, it will be reloaded with user
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annotations at the top (nearest the alignment), above any of the
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automatically generated Conservation, Quality or consensus
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-annotations.</p>
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+annotations. Finally, the Jalview GUI will not, as yet, allow you to output
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+Jalview annotation files for the current alignment, change the line
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+colour, display style, or create groups of quantitative annotation rows.</p>
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</body>
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</html>
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</body>
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</html>
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