+<p><a name="seqannots"/><strong>Sequence Reference Annotation</strong>
+</p>
+<p>
+ Sequence reference annotation is created from 3D structure
+ data, and from the results of sequence based prediction of
+ <a href="../webServices/jnet.html">secondary structure</a> and <a
+ href="../webServices/proteinDisorder.html">disordered region</a>
+ prediction methods.
+</p>
+<p><strong>Sequence Group Annotation</strong>
+</p>
+<p>
+ If sequence groups are defined, <a href="../calculations/conservation.html">Conservation</a>
+ and <a href="../calculations/consensus.html">Consensus</a> annotation can be enabled
+ for each group from the <a href="../menus/alwannotation.html">Annotations menu</a>, or can
+ be imported from a Jalview <a href="annotationsFormat.html">Annotations file</a>.
+</p>
+<p><strong>Sequence Selection from Annotation</strong>
+</p>
+<p>
+ Sequences associated with sequence (or sequence group) annotations can be selected by
+ double-clicking the annotation label with these key combinations:
+ <ul>
+ <li>double-click - Select associated sequences (replaces current selection)</li>
+ <li>shift double-click - add sequences to selection</li>
+ <li>Ctrl (Mac CMD) double-click - toggles inclusion of associated sequences in the current selection</li>
+ </ul>
+ Note this also works in combination with manual sequence selection in the alignment.