- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
has been integrated into Jalview for interactively viewing structures
opened by entries in the <strong>"Structure"</strong> submenu in the <a href="../menus/popupMenu.html">sequence
id pop-up menu</a> (if you can't see this, then you need to <a
has been integrated into Jalview for interactively viewing structures
opened by entries in the <strong>"Structure"</strong> submenu in the <a href="../menus/popupMenu.html">sequence
id pop-up menu</a> (if you can't see this, then you need to <a
sequence). Chimera is available from the Jalview desktop, provided Chimera has been separately installed.</p>
<p>You can set a default choice of Jmol or Chimera structure viewer in <a href="preferences.html#structure"> Preferences</a>.
You can also optionally specify the path to the Chimera program here (if it differs from the standard paths searched by Jalview).
sequence). Chimera is available from the Jalview desktop, provided Chimera has been separately installed.</p>
<p>You can set a default choice of Jmol or Chimera structure viewer in <a href="preferences.html#structure"> Preferences</a>.
You can also optionally specify the path to the Chimera program here (if it differs from the standard paths searched by Jalview).
<ul>
<li>The <strong>"Structure→View
Structure→</strong> submenu allows a single PDB structure to be chosen
<ul>
<li>The <strong>"Structure→View
Structure→</strong> submenu allows a single PDB structure to be chosen
additional structures to an existing Chimera view by selecting their entry
in the appropriate pop-up menu. Jalview will ask you if you wish to add
the structure to the existing alignment, and if you do, it will import
additional structures to an existing Chimera view by selecting their entry
in the appropriate pop-up menu. Jalview will ask you if you wish to add
the structure to the existing alignment, and if you do, it will import
mouse over the structure brings up tooltips giving the residue name, PDB
residue number and chain code
([RES]Num:Chain). Moving the mouse over an
associated residue in an alignment window highlights the associated
mouse over the structure brings up tooltips giving the residue name, PDB
residue number and chain code
([RES]Num:Chain). Moving the mouse over an
associated residue in an alignment window highlights the associated
-atoms in the displayed structures. For comprehensive details of Chimera's commands, refer to the tool's Help menu.</p>
-<p>Basic screen operations (see <a href="https://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/mouse.html">Chimera help</a> for full details).
+atoms in the displayed structures. For comprehensive details of Chimera's commands, refer to the tool's Help menu.
+<p>Basic screen operations (see <a href="http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/mouse.html">Chimera help</a>
+(http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/mouse.html) for full details).