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show unconserved gui and annotation file attribute
[jalview.git]
/
help
/
html
/
features
/
clarguments.html
diff --git
a/help/html/features/clarguments.html
b/help/html/features/clarguments.html
index
8d6a4d8
..
cf444a1
100644
(file)
--- a/
help/html/features/clarguments.html
+++ b/
help/html/features/clarguments.html
@@
-48,14
+48,14
@@
<div align="left">Run Jalview without User Interface</div>
</td>
</tr>
<div align="left">Run Jalview without User Interface</div>
</td>
</tr>
- <tr>
+ <!-- <tr>
<td>
<div align="center">-props FILE</div>
<td>
<div align="left">Use the given Jalview properties file instead
of users default</div>
</td>
<td>
<div align="center">-props FILE</div>
<td>
<div align="left">Use the given Jalview properties file instead
of users default</div>
</td>
- </tr>
+ </tr> -->
<tr>
<td>
<div align="center">-tree FILE</div>
<tr>
<td>
<div align="center">-tree FILE</div>
@@
-91,16
+91,18
@@
<td>
<div align="center">-dasserver nickname=URL</div>
<td>
<td>
<div align="center">-dasserver nickname=URL</div>
<td>
- <div align="left">Add and enable a das server with given
+ <div align="left">Add and enable a <a href="dassettings.html">DAS server</a> with given
nickname (alphanumeric or underscores only) for retrieval of features
nickname (alphanumeric or underscores only) for retrieval of features
- for all alignments</div>
+ for all alignments<br>
+ Sources that also support the sequence command may be specified by prepending the URL with 'sequence:'<br>
+ <em>e.g.</em> sequence:http://localdas.somewhere.org/das/source</div>
</td>
</tr>
<tr>
<td>
<div align="center">-fetchfrom nickname</div>
<td>
</td>
</tr>
<tr>
<td>
<div align="center">-fetchfrom nickname</div>
<td>
- <div align="left">Query nickname for features for the alignments
+ <div align="left">Query a <a href="dassettings.html">DAS source</a> called nickname for features for the alignments
and display them</div>
</td>
</tr>
and display them</div>
</td>
</tr>