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JAL-2284 documentation for the new command-line option
[jalview.git]
/
help
/
html
/
features
/
clarguments.html
diff --git
a/help/html/features/clarguments.html
b/help/html/features/clarguments.html
index
b514e65
..
e065494
100644
(file)
--- a/
help/html/features/clarguments.html
+++ b/
help/html/features/clarguments.html
@@
-1,7
+1,7
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-67,8
+67,8
@@
<div align="center">-annotations FILE/URL</div>
</td>
<td>Add precalculated annotations to the alignment. See <a
<div align="center">-annotations FILE/URL</div>
</td>
<td>Add precalculated annotations to the alignment. See <a
- href="annotationsFormat.html" target="NEW"
- >Annotation File</a> description.
+ href="annotationsFormat.html" target="NEW">Annotation
+ File</a> description.
</td>
</tr>
<tr>
</td>
</tr>
<tr>
@@
-96,6
+96,17
@@
</tr>
<tr>
<td>
</tr>
<tr>
<td>
+ <div align="center">-nonews</div>
+ <td>
+ <div align="left">
+ Disable check for <a href="../webServices/newsreader.html">Jalview
+ news</a> on startup (not recommended other than for classroom /
+ demo usage)
+ </div>
+ </td>
+ </tr>
+ <tr>
+ <td>
<div align="center">-nousagestats</div>
<td>
<div align="left">Turn off google analytics usage tracking</div>
<div align="center">-nousagestats</div>
<td>
<div align="left">Turn off google analytics usage tracking</div>
@@
-247,6
+258,14
@@
<td><div align="left">Create Scalable Vector Graphics
file FILE from alignment.</div></td>
</tr>
<td><div align="left">Create Scalable Vector Graphics
file FILE from alignment.</div></td>
</tr>
+ <tr>
+ <td><div align="center">-biojsMSA FILE</div></td>
+ <td><div align="left">Write an HTML page to display
+ the alignment with the <a href="biojsmsa.html">
+ BioJS MSAviewer MSA</a>
+ </div>
+ </td>
+ </tr>
</table>
</body>
</html>
</table>
</body>
</html>