-</pre>
-
-The fields are as follows:
-
-<ul>
-<li><em>label</em><br>
- Indicate that the feature description should be used to create a
-colour for features of this type.<br>
-<em>Note: if no threshold value is needed then the final '|' may be
-ommitted.<br>
-This keyword was added in Jalview 2.6</em></li>
-
-<li><em>mincolor</em> and <em>maxcolor</em><br>
- Colour triplets specified as hexadecimal or comma separated values
-(may be left blank for a <em>label</em> style colourscheme, but
-remember to specify the remaining fields)</li>
-
-<li><em>absolute</em><br>
- An optional switch indicating that the <em>minvalue</em> and
-<em>maxvalue</em> parameters should be left as is, rather than
-rescaled according to the range of scores for this feature
-type.</li>
-
-<li><em>minvalue</em> and <em>maxvalue</em><br>
- Minimum and maximum values defining the range of scores for which
-the colour range will be defined over. If minvalue is greater than
-maxvalue then the linear mapping will have negative gradient.</li>
-
-<li><em>thresholdtype</em><br>
- Either "none", "below", or "above". <em>below</em> and
-<em>above</em> require an additional <em>threshold value</em> which
-is used to control the display of features with a score either
-below or above the value.</li>
-</ul>
-</li>
-</ul>
-</p>
-
-<p>The remaining lines in the file are the sequence annotation
-definitions, where the now defined features are attached to regions
-on particular sequences. Each feature can optionally include some descriptive text
-which is displayed in a tooltip when the mouse is near the feature on that
-sequence (and can also be used to generate a colour the feature).</p>
-
-<p>If your sequence annotation is already available in GFF Format (see <a href="http://www.sanger.ac.uk/resources/software/gff/spec.html">http://www.sanger.ac.uk/resources/software/gff/spec.html</a>),
-then you can leave it as is, after first adding a line containing
-only 'GFF' after any Jalview feature colour definitions (<em>this mixed format capability was added in Jalview 2.6</em>). Alternately, you can use Jalview's own sequence feature
-annotation format, which additionally allows HTML and URLs to be
-directly attached to each piece of annotation.</p>
-
-<p><strong>Jalview's sequence feature annotation format</strong></p>
-<p>
-Each feature is specified as a tab-separated series of columns as defined below:
-<pre>
+</pre> The fields are as follows:
+
+ <ul>
+ <li><em>label</em><br> Indicate that the feature
+ description should be used to create a colour for features of
+ this type.<br> <em>Note: if no threshold value is
+ needed then the final '|' may be omitted.<br> This
+ keyword was added in Jalview 2.6
+ </em></li>
+
+ <li><em>mincolor</em> and <em>maxcolor</em><br> Colour
+ triplets specified as hexadecimal or comma separated values
+ (may be left blank for a <em>label</em> style colourscheme,
+ but remember to specify the remaining fields)</li>
+
+ <li><em>absolute</em><br> An optional switch
+ indicating that the <em>minvalue</em> and <em>maxvalue</em>
+ parameters should be left as is, rather than rescaled
+ according to the range of scores for this feature type.</li>
+
+ <li><em>minvalue</em> and <em>maxvalue</em><br>
+ Minimum and maximum values defining the range of scores for
+ which the colour range will be defined over. If minvalue is
+ greater than maxvalue then the linear mapping will have
+ negative gradient.</li>
+
+ <li><em>thresholdtype</em><br> Either
+ "none", "below", or "above". <em>below</em>
+ and <em>above</em> require an additional <em>threshold
+ value</em> which is used to control the display of features with
+ a score either below or above the value.</li>
+ </ul>
+ </li>
+ </ul>
+ </p>
+
+ <p>The remaining lines in the file are the sequence annotation
+ definitions, where the now defined features are attached to regions
+ on particular sequences. Each feature can optionally include some
+ descriptive text which is displayed in a tooltip when the mouse is
+ near the feature on that sequence (and can also be used to generate
+ a colour the feature).</p>
+
+ <p>
+ If your sequence annotation is already available in GFF Format (see
+ <a href="http://gmod.org/wiki/GFF2">gmod.org/wiki/GFF2</a>),
+ then you can leave it as is, after first adding a line containing
+ only 'GFF' after any Jalview feature colour definitions (<em>this
+ mixed format capability was added in Jalview 2.6</em>). Alternately,
+ you can use Jalview's own sequence feature annotation format, which
+ additionally allows HTML and URLs to be directly attached to each
+ piece of annotation.
+ </p>
+
+ <p>
+ <strong>Jalview's sequence feature annotation format</strong>
+ </p>
+ <p>Each feature is specified as a tab-separated series of columns
+ as defined below:
+ <pre>