-<p>The "<strong>Output</strong>" tab has a selection box allowing the \r
- user to set a default rendering style for EPS export. "Lineart" will \r
- produce an accurate representation of the visible alignment in Jalview, all \r
- the characters will be graphics objects. "Text" will produce a much \r
- smaller file and will rely on the software you use to view the EPS file, such \r
- as Adobe Illustrator, having the same font as the file was created with. You \r
- will only be able to edit text in an EPS file if you select the "Text" \r
- option.<br>\r
- Choose "Prompt each time" to select between Lineart and Text each \r
- time you make an EPS file.</p>\r
-<p>The output tab also has a group of checkboxes for each file format. If these \r
+<p><a name="output"><strong>Output Preferences tab</strong></a></p>\r
+<p><em>EPS Rendering Style</em><br>\r
+This is a selection box which allows the \r
+ user to set a default rendering style for EPS export: \r
+<ul><li>"Lineart"<br>EPS files will accurately\r
+reproduce the alignment view in Jalview and all characters will be\r
+converted into line art. Files generated in this way are large and are\r
+not easily editable, but have no font table dependencies.</li>\r
+<li>"Text"<br>EPS files will be a mixture of text and\r
+lineart. This produces compact files that can be edited easily in\r
+programs like Microsoft Word and Adobe Illustrator, but can be\r
+problematic if the fonts available to jalview are not accessible by\r
+the program reading the EPS file.\r
+<li>"Prompt each time"<br>Choose this to be asked select between Lineart and Text each time you make an EPS file.</li>\r
+</ul>\r
+</p>\r
+<p><em>Sequence//Start-End Numbering</em><br>\r
+The output tab also has a group of checkboxes for each file format. If these \r